Posts

Last Gemini Answer Spring Batch as a model for CRISPR Cas9

Image
To the question  Could Spring batch be the model describing how Crispr cas9 works ? Gemini answered  Spring Batch as a Model for CRISPR-Cas9: A Thought Experiment Yes, Spring Batch could potentially serve as a conceptual model for understanding how CRISPR-Cas9 works. Here's a breakdown of how the two might align: Spring Batch Components and CRISPR-Cas9: Job: The overall CRISPR-Cas9 process, including target identification, guide RNA design, and gene editing. Step: Individual stages of the process, such as target recognition, cleavage, and repair. Reader: The guide RNA, which reads the target DNA sequence.   Processor: The Cas9 enzyme, which processes the target DNA by cutting it at specific locations.   Writer: The cell's repair machinery, which writes the new DNA sequence. Similarities and Differences: Sequencing: Both Spring Batch and CRISPR-Cas9 involve a sequential process. In Spring Batch, this is often a batch job processing data in chunks. In CRISPR-Cas9,
Post a Comment
Read more

Generative AI explaining my model

Image
 To the question : " Could Spring batch be the model describing how Crispr cas9 works ?!" Gemini answered There is an interesting proposal suggesting Spring Batch, a Java framework for batch processing, could be used as a conceptual model to describe CRISPR-Cas9 functionality. While not a completely accurate representation of the biological process, it serves as an intriguing analogy. Here's a breakdown of the comparison: Spring Batch Components: ItemReader:  Reads input data,  analogous to CRISPR guide RNA identifying the target DNA sequence. ItemProcessor:  Processes the data,  similar to Cas9 protein binding to the target sequence. ItemWriter:  Writes the processed data,  comparable to Cas9 cutting the DNA at the identified location. CRISPR-Cas9 Components: Guide RNA:  Short RNA sequence guiding Cas9 to the target location. Cas9 protein:  Enzyme that cuts DNA at the specified location. Repair mechanisms:  Cellular processes that repair the cut DNA,  leading to var
Post a Comment
Read more

Theoretical Model Spring Batch + Karp Rabin = How CRISPR Cas9 Works

Image
Is there a mathematical model or informatic one to describe how Crispr Cas9 works? I don't know. I share with you my theoretical Model on How Crispr Cas 9 Works. Spring Batch + Karp Rabin = How Crispr Cas 9 Works Vulgarization Spring Batch + Karp Rabin = How Crispr Cas9  works                                    Author : Wadï Mami                                Publication Date : 07/06/2021                            Email : wmami@steg.com.tn  Wadï Mami Theory on explaining how Could Spring Batch + karp rabin explain how Crispr Cas9 Works. CRISPR-Cas9   CRISPR-Cas9 was adapted from a naturally occurring genome editing system in bacteria. The bacteria capture snippets of DNA from invading viruses and use them to create DNA segments known as CRISPR arrays.The CRISPR arrays allow the bacteria to "remember" the viruses (or closely related ones). If the viruses attack again, the bacteria produce RNA segments from the CRISPR arrays to target the viruses' DNA. The bacteria th
3 comments
Read more